Search for taxa using vernacular names
select_by_vernacular(data, names, exact = FALSE)(data.frame) the data.frame imported with the
load_florabr function or generated with the function
select_species.
(character) vernacular name ("Nome comum") of the species to be searched
(logic) if TRUE, the function will search only for exact matches. For example, if names = "pinheiro" and exact = TRUE, the function will return only the species popularly known as "pinheiro". On the other hand, if names = "pinheiro" and exact = FALSE, the function will return other results as "pinheiro-do-parana". Default = FALSE
a data.frame with the species with vernacular names that match the input names
Flora e Funga do Brasil. Jardim Botânico do Rio de Janeiro. Available at: http://floradobrasil.jbrj.gov.br/
Flora e Funga do Brasil. Jardim Botânico do Rio de Janeiro. Available at: http://floradobrasil.jbrj.gov.br/
data("bf_data") #Load Flora e Funga do Brasil data
#Search for species whose vernacular name is 'pinheiro'
pinheiro_exact <- select_by_vernacular(data = bf_data,
names = "pinheiro",
exact = TRUE)
pinheiro_exact
#> species
#> 134218 Araucaria columnaris
#> 140840 Pinus canariensis
#> 140842 Pinus banksiana
#> 140856 Pinus palustris
#> 140864 Pinus nigra
#> 140890 Pinus echinata
#> 140902 Pinus densiflora
#> 140986 Pinus tecunumanii
#> 140991 Pinus thunbergii
#> scientificName acceptedName
#> 134218 Araucaria columnaris (J.R.Forst.) Hook. <NA>
#> 140840 Pinus canariensis C.Sm. <NA>
#> 140842 Pinus banksiana Lamb. <NA>
#> 140856 Pinus palustris Mill. <NA>
#> 140864 Pinus nigra J.F.Arnold <NA>
#> 140890 Pinus echinata Mill. <NA>
#> 140902 Pinus densiflora Siebold & Zucc. <NA>
#> 140986 Pinus tecunumanii F.Schwerdtf. ex Eguiluz & J.P.Perry <NA>
#> 140991 Pinus thunbergii Parl. <NA>
#> kingdom group subgroup phylum class order
#> 134218 Plantae Gymnosperms <NA> Tracheophyta Pinopsida Pinales
#> 140840 Plantae Gymnosperms <NA> Tracheophyta Pinopsida Pinales
#> 140842 Plantae Gymnosperms <NA> Tracheophyta Pinopsida Pinales
#> 140856 Plantae Gymnosperms <NA> Tracheophyta Pinopsida Pinales
#> 140864 Plantae Gymnosperms <NA> Tracheophyta Pinopsida Pinales
#> 140890 Plantae Gymnosperms <NA> Tracheophyta Pinopsida Pinales
#> 140902 Plantae Gymnosperms <NA> Tracheophyta Pinopsida Pinales
#> 140986 Plantae Gymnosperms <NA> Tracheophyta Pinopsida Pinales
#> 140991 Plantae Gymnosperms <NA> Tracheophyta Pinopsida Pinales
#> family genus lifeForm habitat biome
#> 134218 Araucariaceae Araucaria Tree Terrestrial Unknown
#> 140840 Pinaceae Pinus Tree Terrestrial Unknown
#> 140842 Pinaceae Pinus Tree Terrestrial Unknown
#> 140856 Pinaceae Pinus Tree Terrestrial Unknown
#> 140864 Pinaceae Pinus Tree Terrestrial Unknown
#> 140890 Pinaceae Pinus Tree Terrestrial Unknown
#> 140902 Pinaceae Pinus Tree Terrestrial Unknown
#> 140986 Pinaceae Pinus Tree Terrestrial Unknown
#> 140991 Pinaceae Pinus Tree Terrestrial Unknown
#> states vegetation origin endemism
#> 134218 MG;PB;PE;PR;RS;SC;SE;SP Anthropic_Area Cultivated Non-endemic
#> 140840 MG;RJ;RS;SP Anthropic_Area Cultivated Non-endemic
#> 140842 RS Anthropic_Area Cultivated Non-endemic
#> 140856 PR;RS;SC;SP Anthropic_Area Cultivated Non-endemic
#> 140864 RS;SP Anthropic_Area Cultivated Non-endemic
#> 140890 PR;RS;SP Anthropic_Area Cultivated Non-endemic
#> 140902 MG Anthropic_Area Cultivated Non-endemic
#> 140986 SP Anthropic_Area Naturalized Non-endemic
#> 140991 PR;SP Anthropic_Area Cultivated Non-endemic
#> taxonomicStatus nomenclaturalStatus
#> 134218 Accepted Correct
#> 140840 Accepted <NA>
#> 140842 Accepted <NA>
#> 140856 Accepted <NA>
#> 140864 Accepted <NA>
#> 140890 Accepted <NA>
#> 140902 Accepted <NA>
#> 140986 Accepted <NA>
#> 140991 Accepted <NA>
#> vernacularName
#> 134218 pinheiro, pinheiro-de-natal, pinheiro-alemao, pinheiro-de-cook, araucaria-colunar, araucaria-excelsa
#> 140840 pinheiro-das-canarias, pinheiro
#> 140842 pinus, pinheiro, jack-pine
#> 140856 pinheiro, pinheiro-de-folha-longa, pinheiro-da-florida, pinheiro-amarelo, pinheiro-breu, pinheiro-da-georgia, pinheiro-terebintina
#> 140864 pinheiro, austrian-pine
#> 140890 pinheiro-de-folha-curta, pinheiro-da-carolina-do-norte, pinheiro-pobre, pinheiro-amarelo-de-folha-curta, pinheiro-amarelo, pinus, pinheiro, short-leaf-pine
#> 140902 pinheiro, japanese-red-pine
#> 140986 pinus, pinheiro
#> 140991 pinus, pinheiro
#> taxonRank id
#> 134218 Species 609385
#> 140840 Species 616545
#> 140842 Species 616547
#> 140856 Species 616568
#> 140864 Species 616576
#> 140890 Species 616608
#> 140902 Species 616620
#> 140986 Species 616713
#> 140991 Species 616718
#Search for species whose vernacular name is 'pinheiro', allowing non-exact
#matches
pinheiro_not_exact <- select_by_vernacular(data = bf_data,
names = "pinheiro",
exact = FALSE)
head(pinheiro_not_exact)
#> species scientificName
#> 26797 Araucaria angustifolia Araucaria angustifolia (Bertol.) Kuntze
#> 123595 Cryptomeria japonica Cryptomeria japonica (Thunb. ex L.f.) D.Don
#> 123731 Taxodium distichum Taxodium distichum (L.) Rich.
#> 134088 Cunninghamia lanceolata Cunninghamia lanceolata (Lamb.) Hook.
#> 134218 Araucaria columnaris Araucaria columnaris (J.R.Forst.) Hook.
#> 134711 Chamaecyparis lawsoniana Chamaecyparis lawsoniana (A.Murray) Parl.
#> acceptedName kingdom group subgroup phylum class order
#> 26797 <NA> Plantae Gymnosperms <NA> Tracheophyta Pinopsida Pinales
#> 123595 <NA> Plantae Gymnosperms <NA> Tracheophyta Pinopsida Pinales
#> 123731 <NA> Plantae Gymnosperms <NA> Tracheophyta Pinopsida Pinales
#> 134088 <NA> Plantae Gymnosperms <NA> Tracheophyta Pinopsida Pinales
#> 134218 <NA> Plantae Gymnosperms <NA> Tracheophyta Pinopsida Pinales
#> 134711 <NA> Plantae Gymnosperms <NA> Tracheophyta Pinopsida Pinales
#> family genus lifeForm habitat biome
#> 26797 Araucariaceae Araucaria Tree Terrestrial Atlantic_Forest;Pampa
#> 123595 Cupressaceae Cryptomeria Tree Terrestrial Unknown
#> 123731 Cupressaceae Taxodium Tree Terrestrial Unknown
#> 134088 Cupressaceae Cunninghamia Tree Terrestrial Unknown
#> 134218 Araucariaceae Araucaria Tree Terrestrial Unknown
#> 134711 Cupressaceae Chamaecyparis Tree Terrestrial Unknown
#> states
#> 26797 MG;PR;RJ;RS;SC;SP
#> 123595 DF;ES;MG;PA;PR;RJ;RS;SC;SP
#> 123731 MG;PR;RJ;RS;SC;SP
#> 134088 MG;PR;RJ;RS;SC;SP
#> 134218 MG;PB;PE;PR;RS;SC;SE;SP
#> 134711 PR;RJ;RS;SP
#> vegetation
#> 26797 High_Altitude_Grassland;Mixed_Ombrophyllous_Forest;Seasonally_Semideciduous_Forest
#> 123595 Anthropic_Area
#> 123731 Anthropic_Area
#> 134088 Anthropic_Area
#> 134218 Anthropic_Area
#> 134711 Anthropic_Area
#> origin endemism taxonomicStatus nomenclaturalStatus
#> 26797 Native Non-endemic Accepted Correct
#> 123595 Cultivated Non-endemic Accepted Correct
#> 123731 Cultivated Non-endemic Accepted Correct
#> 134088 Cultivated Non-endemic Accepted Correct
#> 134218 Cultivated Non-endemic Accepted Correct
#> 134711 Cultivated Non-endemic Accepted <NA>
#> vernacularName
#> 26797 araucaria, pinheiro-do-parana, curi, pinheiro-brasileiro, pinho-do-parana
#> 123595 pinheiro-vermelho, cedro-do-japao, cedro-japones, pinheiro-do-japao, araucaria-do-japao, arvore-de-natal, japanese-cedar, cedrinho-japones
#> 123731 cipreste-calvo, cipreste-deciduo, cipreste-do-brejo, pinheiro-do-brejo, cipreste-vermelho, swamp-cypress, louisiana-cypress, marsh-cypress, cispreste-da-luisiana, bald-cypress, cipreste-dos-pantanos
#> 134088 cuningamia, cunninghamia, pinhao-chines, pinheiro-alemao, pinheiro-chines, arvore-do-natal
#> 134218 pinheiro, pinheiro-de-natal, pinheiro-alemao, pinheiro-de-cook, araucaria-colunar, araucaria-excelsa
#> 134711 cedro-de-oregon, cerdo-branco, cipreste-de-lawson, tuia, falso-cipreste, pinheiro-prateado, cipreste-de-lawson, cipreste-nevado, cipreste, alumi, cipreste-alumi, cipreste-escaravelho
#> taxonRank id
#> 26797 Species 33971
#> 123595 Species 596703
#> 123731 Species 596865
#> 134088 Species 609253
#> 134218 Species 609385
#> 134711 Species 609897