A cleaned dataset of occurrence records for Yellow Trumpet Tree
(Handroanthus serratifolius) retrieved from the BIEN database.
The raw data were downloaded using get_bien()
The dataset was subsequently processed with the package’s internal
flagging workflow (flag_duplicates() and remove_flagged()) to remove
duplicated records.
Format
A data frame containing spatial coordinates, taxonomic information, and metadata returned by BIEN, after cleaning. Columns include (but may not be limited to):
scrubbed_species_binomial: Cleaned species namelongitude,latitude: Geographic coordinatescountry,state_province, and other political boundary fields
Examples
# View dataset
head(occ_bien)
#> scrubbed_species_binomial native_status native_status_reason
#> 1 Handroanthus serratifolius N Native to region, as per checklist
#> 2 Handroanthus serratifolius N Native to region, as per checklist
#> 3 Handroanthus serratifolius N Native to region, as per checklist
#> 4 Handroanthus serratifolius N Native to region, as per checklist
#> 5 Handroanthus serratifolius N Native to region, as per checklist
#> 6 Handroanthus serratifolius N Native to region, as per checklist
#> native_status_sources is_introduced native_status_country
#> 1 conosur, flbr, powo 0 N
#> 2 powo, tropicos 0 N
#> 3 powo 0 N
#> 4 conosur, flbr, powo 0 N
#> 5 conosur, flbr, powo 0 N
#> 6 powo 0 N
#> native_status_state_province native_status_county_parish country
#> 1 N <NA> Brazil
#> 2 <NA> <NA> Bolivia
#> 3 <NA> <NA> Colombia
#> 4 N <NA> Brazil
#> 5 N <NA> Brazil
#> 6 <NA> <NA> Peru
#> state_province county locality
#> 1 Amazonas <NA> Reserva Florestal Ducke, Manaus-Itacoatiara, km 26.
#> 2 <NA> <NA> <NA>
#> 3 Cesar <NA> Campoalegre
#> 4 Tocantins <NA> Faz. São Judas - Porto Nacional - TO
#> 5 Goias <NA> Luziânia
#> 6 <NA> <NA> Puerto Ocopa
#> elevation_m latitude longitude date_collected datasource
#> 1 NA -2.88000 -59.97000 1995-08-04 GBIF
#> 2 NA -14.55278 -68.68686 <NA> traits
#> 3 NA 10.11333 -73.78639 2017-09-04 GBIF
#> 4 NA -10.80000 -48.41667 2016-08-29 GBIF
#> 5 NA -16.25250 -47.95030 <NA> GBIF
#> 6 600 -11.22430 -74.41720 <NA> dryflor
#> dataset
#> 1 US
#> 2 traits
#> 3 Patrimonio Natural Fondo para la Biodiversidad y Áreas Protegidas
#> 4 UEFS
#> 5 UnB
#> 6 dryflor
#> dataowner
#> 1 US
#> 2 traits
#> 3 Patrimonio Natural Fondo para la Biodiversidad y Áreas Protegidas
#> 4 UEFS
#> 5 UnB
#> 6 dryflor
#> custodial_institution_codes
#> 1 US
#> 2 <NA>
#> 3 Patrimonio Natural Fondo para la Biodiversidad y Áreas Protegidas
#> 4 UEFS
#> 5 UnB
#> 6 <NA>
#> collection_code datasource_id catalog_number
#> 1 Botany 4885 2284210913
#> 2 <NA> NA 1544595
#> 3 <NA> 1516 1829119958
#> 4 HUEFS 1909 1837839064
#> 5 UB 3029 1087243702
#> 6 <NA> NA <NA>
#> recorded_by record_number identified_by
#> 1 M. Costa, P. A. Assunçao & E. C. Pereira 333 <NA>
#> 2 <NA> <NA> <NA>
#> 3 Cesar Barbosa | Linda J. Ortíz <NA> <NA>
#> 4 Chagas, D.B.das 132 <NA>
#> 5 Incógnito 12149 Gentry, AH
#> 6 <NA> <NA> <NA>
#> date_identified identification_remarks is_cultivated_observation
#> 1 <NA> <NA> NA
#> 2 <NA> <NA> NA
#> 3 <NA> <NA> NA
#> 4 <NA> <NA> NA
#> 5 <NA> <NA> NA
#> 6 <NA> <NA> NA
#> is_cultivated_in_region is_location_cultivated observation_type
#> 1 0 NA specimen
#> 2 0 NA trait occurrence
#> 3 0 NA human observation
#> 4 0 NA specimen
#> 5 0 NA specimen
#> 6 0 NA occurrence
# Number of records
nrow(occ_bien)
#> [1] 1791