Returns a data.frame with a subset of species from Fauna do Brasil database
subset_fauna(data, species, include_subspecies = FALSE)(data.frame) the data.frame imported with the
load_faunabr function.
(character) names of the species to be extracted from Fauna do Brasil database.
(logical) include subspecies? Default = FALSE
A data.frame with the selected species.
data("fauna_data") #Load data example
#Species to extract from database
spp <- c("Panthera onca", "Mazama jucunda", "Subulo gouzoubira")
spp_subset <- subset_fauna(data = fauna_data, species = spp,
include_subspecies = FALSE)
spp_subset
#> species subspecies scientificName validName
#> 3520 Panthera onca <NA> Panthera onca (Linnaeus, 1758) <NA>
#> 7502 Mazama jucunda <NA> Mazama jucunda Thomas, 1913 <NA>
#> 7575 Subulo gouzoubira <NA> Subulo gouzoubira G. Fischer, 1814 <NA>
#> kingdom phylum class order family genus
#> 3520 Animalia Chordata Mammalia Carnivora Felidae Panthera
#> 7502 Animalia Chordata Mammalia Artiodactyla Cervidae Mazama
#> 7575 Animalia Chordata Mammalia Artiodactyla Cervidae Subulo
#> lifeForm habitat
#> 3520 free_living_individual terrestrial
#> 7502 herbivore terrestrial
#> 7575 herbivore;free_living_individual terrestrial
#> states
#> 3520 AC;AM;AP;BA;CE;DF;ES;GO;MA;MG;MS;MT;PA;PI;PR;RJ;RO;RR;RS;SC;SP;TO
#> 7502 BA;ES;MG;PR;RJ;SC;SP
#> 7575 AL;BA;CE;DF;ES;GO;MA;MG;MS;MT;PB;PE;PI;PR;RJ;RN;RS;SC;SE;SP;TO
#> countryCode origin
#> 3520 AR;BO;BR;BZ;CO;CR;EC;GF;GT;GY;HN;MX;NI;PA;PE;PY;SR;US;VE native
#> 7502 BR native
#> 7575 AR;BO;BR;PY;UY native
#> taxonomicStatus nomenclaturalStatus
#> 3520 valid <NA>
#> 7502 valid <NA>
#> 7575 valid <NA>
#> vernacularName
#> 3520 Onca-pintada, Jaguarete, Cangucu, Onca-verdadeira, Jaguar, Yaguar, Yaguarete, Jaguar
#> 7502 Veado mateiro pequeno
#> 7575 Veado catingueiro
#> taxonRank id language
#> 3520 species 60793 en
#> 7502 species 213530 en
#> 7575 species 221954 en